Opened 12 years ago

Last modified 11 years ago

#28 new proposed-project

Bioinformatics tools

Reported by: (none) Owned by: none
Priority: Keywords:
Cc: Difficulty: unknown
Mentor: not-accepted Topic: Bioinformatics

Description (last modified by gordp)

  1. Further develop RBR, a tool for masking repeats. This can include a) optimize (using FastPackedString and/or a new internal data structure); b) extend functionality.

For more details, click here.

  1. Develop a tool for annotation/classification of sequences. This would involve computation on and visualization of graphs (experience with the latter would be really great).

For more details, click here.

Prior bioinformatics knowledge is not a requirement. Please contact me for details.

Interested Mentors

  • Ketil Malde (kzm) <ketil@…>

Interested Students

  • Mark Reitblatt <reitblatt@…>
  • N Rajagopal (IRC: tuxplorer) <rajagopal.n@…>
  • Nicolas Wu <nicolas.wu@…>

Change History (10)

comment:1 Changed 12 years ago by paolo

Description: modified (diff)

comment:2 Changed 12 years ago by Reitblatt

Description: modified (diff)

comment:3 Changed 12 years ago by KetilMalde

Description: modified (diff)

I'm probably going to split up this ticket, as there are (at least) two separate projects. I've also written a more detailed description of part one, available from my home page.

comment:4 Changed 12 years ago by Rajagopal N

Description: modified (diff)

comment:5 Changed 12 years ago by nickwu2000

Description: modified (diff)
Reporter: paolo deleted

comment:6 Changed 12 years ago by KetilMalde

Description: modified (diff)

comment:7 Changed 12 years ago by Rajagopal N

Description: modified (diff)

comment:8 Changed 12 years ago by gordp

Description: modified (diff)

comment:9 Changed 11 years ago by gordp

Description: modified (diff)

comment:10 Changed 11 years ago by KetilMalde

This is the 2006 proposal. I have already done 1), if anybody is very interested, I can dust off 2), but I think the 'bio' lib project is generally more desirable.

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