Changes between Initial Version and Version 1 of Ticket #1121


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Timestamp:
Mar 23, 2007 10:39:20 AM (7 years ago)
Author:
KetilMalde
Comment:

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  • Ticket #1121 – Description

    initial v1  
    55 * sequence alignment:  some rudimentary alignment exists already, but more advanced methods and multiple alignment, phylogeny, etc would be useful.  Haskell should also lend itself well to parallel alignment.  (In addition, laziness could possibly be used to make T-coffee-type multiple alignments more efficient?) 
    66 
    7  * machine learning: hidden markov models, neural networks, self-organizing maps, support vector machines, and other methods.  Useful in many contexts (also outside bioinformatics), and good and efficient implementations are needed. 
     7 * machine learning: this is an important aspect, but as it is applicable to many different domains, I've added a separate ticket.  Interested students should probably apply for a pure/general machine learning library (ticket 1127) instead of restricting it to bioinformatics. 
    88 
    99 * file formats: currently there's support for a handful of file formats, but there exists many other, usually simple text-based, file formats to which a parser would be nice to have.  File format support is likely to be a part of other tasks, but also useful in its own right.